#!/bin/bash

#root FOPI/ClustErrStudy/runReco.C\(\"outfiles/long_tpc/seed_4711_geom/Cosmics_FopiMC_90ar85_1.raw.root\",90,\"ar\",85,false,0,0,0,1,300\) -q
evts=0
distort=0

#new clustering
cp tpc/reco/TpcClusterFinderSimple.cxx_joh tpc/reco/TpcClusterFinderSimple.cxx
cp tpc/reco/TpcClusterFinderSimple.h_joh tpc/reco/TpcClusterFinderSimple.h
touch tpc/reco/TpcClusterFinderSimple.h tpc/reco/TpcClusterFinderSimple.cxx
make -C build

#if [ 0 -eq 1 ]
#then
#simulation no reclustering
root -l FOPI/runRecoFOPI_MC_mb_recl.C\(\"outfiles/new_clustering_no_distortions/Cosmics_FopiMC_86ar85_1111.raw.root\",86,\"ar\",85,1,${evts},false\) -q
python FOPI/mberger/analyseFOPIReco_cosmics.py --filenames outfiles/new_clustering_no_distortions/Cosmics_FopiMC_86ar85_1111.reco.root --out anafiles/new_clustering_no_distort_no_recl  --sim --batch --raw outfiles/new_clustering_no_distortions/Cosmics_FopiMC_86ar85_1111.raw.root

#simulation with reclustering
root -l FOPI/runRecoFOPI_MC_mb_recl.C\(\"outfiles/new_clustering_no_distortions/Cosmics_FopiMC_86ar85_1111.raw.root\",86,\"ar\",85,1,${evts},true\) -q
python FOPI/mberger/analyseFOPIReco_cosmics.py --filenames outfiles/new_clustering_no_distortions/Cosmics_FopiMC_86ar85_1111_recl.reco.root --out anafiles/new_clustering_no_distort_recl_1cm   --sim --batch --raw outfiles/new_clustering_no_distortions/Cosmics_FopiMC_86ar85_1111.raw.root

#if [ ${distort} -eq 1]
#then
#simulation no reclustering distortion
root -l FOPI/runRecoFOPI_MC_mb_recl.C\(\"outfiles/new_clustering_distortions/47mm/Cosmics_FopiMC_86ar85_1111.raw.root\",86,\"ar\",85,1,${evts},false\) -q
python FOPI/mberger/analyseFOPIReco_cosmics.py --filenames outfiles/new_clustering_distortions/47mm/Cosmics_FopiMC_86ar85_1111.reco.root --out anafiles/new_clustering_distort47_no_recl  --sim --batch --raw outfiles/new_clustering_distortions/47mm/Cosmics_FopiMC_86ar85_1111.raw.root

#simulation with reclustering distortion
root -l FOPI/runRecoFOPI_MC_mb_recl.C\(\"outfiles/new_clustering_distortions/47mm/Cosmics_FopiMC_86ar85_1111.raw.root\",86,\"ar\",85,1,${evts},true\) -q
python FOPI/mberger/analyseFOPIReco_cosmics.py --filenames outfiles/new_clustering_distortions/47mm/Cosmics_FopiMC_86ar85_1111_recl.reco.root --out anafiles/new_clustering_distort47_recl_1cm   --sim --batch --raw outfiles/new_clustering_distortions/47mm/Cosmics_FopiMC_86ar85_1111.raw.root
#fi

#data no reclustering
root -l  FOPI/runReco_mb.C\(3888,\"outfiles/new_clustering_data/\",false,${evts}\) -q
python FOPI/mberger/analyseFOPIReco_cosmics.py --filenames outfiles/new_clustering_data/runC_3888_smoothed.reco.root --out anafiles/runC_3888_new_clustering_no_recl --thec --phic --batch
#fi

#data with reclustering
root -l  FOPI/runReco_mb.C\(3888,\"outfiles/new_clustering_data/\",true,${evts}\) -q
python FOPI/mberger/analyseFOPIReco_cosmics.py --filenames outfiles/new_clustering_data/runC_3888_smoothed_recl.reco.root --out anafiles/runC_3888_new_clustering_recl_1cm --thec --phic --batch
#fi

#old clustering
cp tpc/reco/TpcClusterFinderSimple.cxx_orig tpc/reco/TpcClusterFinderSimple.cxx
cp tpc/reco/TpcClusterFinderSimple.h_orig tpc/reco/TpcClusterFinderSimple.h
touch tpc/reco/TpcClusterFinderSimple.h tpc/reco/TpcClusterFinderSimple.cxx
make -C build

#if [ 1 -eq 1 ]
#then
#simulation no reclustering
root -l FOPI/runRecoFOPI_MC_mb_recl.C\(\"outfiles/old_clustering_no_distortions/Cosmics_FopiMC_86ar85_1111.raw.root\",86,\"ar\",85,1,${evts},false\) -q
python FOPI/mberger/analyseFOPIReco_cosmics.py --filenames outfiles/old_clustering_no_distortions/Cosmics_FopiMC_86ar85_1111.reco.root --out anafiles/old_clustering_no_distort_no_recl  --sim --batch --raw outfiles/old_clustering_no_distortions/Cosmics_FopiMC_86ar85_1111.raw.root

#simulation with reclustering
root -l FOPI/runRecoFOPI_MC_mb_recl.C\(\"outfiles/old_clustering_no_distortions/Cosmics_FopiMC_86ar85_1111.raw.root\",86,\"ar\",85,1,${evts},true\) -q
python FOPI/mberger/analyseFOPIReco_cosmics.py --filenames outfiles/old_clustering_no_distortions/Cosmics_FopiMC_86ar85_1111_recl.reco.root --out anafiles/old_clustering_no_distort_recl_1cm  --sim --batch --raw outfiles/old_clustering_no_distortions/Cosmics_FopiMC_86ar85_1111.raw.root

#data no reclustering
root -l  FOPI/runReco_mb.C\(3888,\"outfiles/old_clustering_data/\",false,${evts}\) -q
python FOPI/mberger/analyseFOPIReco_cosmics.py --filenames outfiles/old_clustering_data/runC_3888_smoothed.reco.root --out anafiles/runC_3888_old_clustering_no_recl --thec --phic --batch
#fi

#data with reclustering
root -l  FOPI/runReco_mb.C\(3888,\"outfiles/old_clustering_data/\",true,${evts}\) -q
python FOPI/mberger/analyseFOPIReco_cosmics.py --filenames outfiles/old_clustering_data/runC_3888_smoothed_recl.reco.root --out anafiles/runC_3888_old_clustering_recl_1cm --thec --phic --batch


#simulation no reclustering distortion
root -l FOPI/runRecoFOPI_MC_mb_recl.C\(\"outfiles/old_clustering_distortions/47mm/Cosmics_FopiMC_86ar85_1111.raw.root\",86,\"ar\",85,1,${evts},false\) -q
python FOPI/mberger/analyseFOPIReco_cosmics.py --filenames outfiles/old_clustering_distortions/47mm/Cosmics_FopiMC_86ar85_1111.reco.root --out anafiles/old_clustering_distort47_no_recl  --sim --batch --raw outfiles/old_clustering_distortions/47mm/Cosmics_FopiMC_86ar85_1111.raw.root

#simulation with reclustering distortion
root -l FOPI/runRecoFOPI_MC_mb_recl.C\(\"outfiles/old_clustering_distortions/47mm/Cosmics_FopiMC_86ar85_1111.raw.root\",86,\"ar\",85,1,${evts},true\) -q
python FOPI/mberger/analyseFOPIReco_cosmics.py --filenames outfiles/old_clustering_distortions/47mm/Cosmics_FopiMC_86ar85_1111_recl.reco.root --out anafiles/old_clustering_distort47_recl_1cm   --sim --batch --raw outfiles/old_clustering_distortions/47mm/Cosmics_FopiMC_86ar85_1111.raw.root

#new clustering
cp tpc/reco/TpcClusterFinderSimple.cxx_joh tpc/reco/TpcClusterFinderSimple.cxx
cp tpc/reco/TpcClusterFinderSimple.h_joh tpc/reco/TpcClusterFinderSimple.h
touch tpc/reco/TpcClusterFinderSimple.h tpc/reco/TpcClusterFinderSimple.cxx
make -C build