#!/bin/bash

#mc with cosmics
#root -l macro/tpc/FOPI/runMCFOPICosmics.C\(86,\"ar\",85,\"outfiles/MC/no_distortions_cosmics/\",25000\) -q

#digi no distorted
#root -l macro/tpc/FOPI/runDigiFOPICosmics.C\(\"outfiles/MC/no_distortions_cosmics/Cosmics_FopiMC_86ar85_1.mc.root\",86,\"ar\",85\) -q

#digi 47mm distorted
#root -l macro/tpc/FOPI/runDigiFOPICosmics.C\(\"outfiles/MC/distortions_cosmics/47mm/Cosmics_FopiMC_86ar85_1.mc.root\",86,\"ar\",85,\"datafiles/full_field_-200.0_-309.6_4s3_4.7_highres_merged.txt\"\) -q

#digi 35mm distorted
#root -l macro/tpc/FOPI/runDigiFOPICosmics.C\(\"outfiles/MC/distortions_cosmics/35mm/Cosmics_FopiMC_86ar85_1.mc.root\",86,\"ar\",85,\"datafiles/full_field_-200.0_-309.6_4s3_3.5__merged.txt\"\) -q

#digi 47mm distorted and real potentials
#root -l macro/tpc/FOPI/runDigiFOPICosmics.C\(\"outfiles/MC/distortions_cosmics/47mm_realpot/Cosmics_FopiMC_86ar85_1.mc.root\",86,\"ar\",85,\"datafiles/full_field_-148.93_-312.89_4s3_4.7_merged.txt\"\) -q

#digi 47 mm distorted only shift
#root -l macro/tpc/FOPI/runDigiFOPICosmics.C\(\"outfiles/MC/distortions_cosmics/fc_shift/Cosmics_FopiMC_86ar85_1.mc.root\",86,\"ar\",85,\"datafiles/full_field_-341.0_-312.9_0s0_4.7_0sh2__merged.txt\"\) -q

#digi 47mm new distortion map
#root -l macro/tpc/FOPI/runDigiFOPICosmics.C\(\"outfiles/MC/distortions_newmap/Cosmics_FopiMC_86ar85_1.mc.root\",86,\"ar\",85,\"datafiles/full_field_-148.93_-312.89_4s3_4.7__merged7.txt\"\) -q

#digi 47mm distorted perfect LS field
#root -l macro/tpc/FOPI/runDigiFOPICosmics.C\(\"outfiles/MC/distortions_cosmics/47mm_perfectLS/Cosmics_FopiMC_86ar85_1.mc.root\",86,\"ar\",85,\"datafiles/full_field_-341.0_-312.9_4s3_4.7__merged.txt\",0\) -q

#digi 47mm distorted no short
#root -l macro/tpc/FOPI/runDigiFOPICosmics.C\(\"outfiles/MC/distortions_cosmics/47mm_noShort/Cosmics_FopiMC_86ar85_1.mc.root\",86,\"ar\",85,\"datafiles/full_field_-148.93_-312.89_0s0_4.7__merged.txt\",0\) -q

#cp tpc/reco/TpcClusterFinderSimple.cxx_joh tpc/reco/TpcClusterFinderSimple.cxx
#cp tpc/reco/TpcClusterFinderSimple.h_joh tpc/reco/TpcClusterFinderSimple.h
#touch tpc/reco/TpcClusterFinderSimple.h tpc/reco/TpcClusterFinderSimple.cxx
#make -C build

#reco no distorted no recl
root -l  FOPI/runRecoFOPI_MC_mb_recl.C\(\"outfiles/MC/no_distortions_cosmics/Cosmics_FopiMC_86ar85_1.raw.root\",86,\"ar\",85,1,0,false,false\) -q
python FOPI/mberger/analyseFOPIReco_cosmics2.py outfiles/MC/no_distortions_cosmics/Cosmics_FopiMC_86ar85_1.reco.root --outfname outfiles/MC/no_distortions_cosmics/Cosmics_FopiMC_86ar85_1.hists.root
#reco no distorted recl
root -l  FOPI/runRecoFOPI_MC_mb_recl.C\(\"outfiles/MC/no_distortions_cosmics/Cosmics_FopiMC_86ar85_1.raw.root\",86,\"ar\",85,1,0,true,true\) -q
python FOPI/mberger/analyseFOPIReco_cosmics2.py outfiles/MC/no_distortions_cosmics/Cosmics_FopiMC_86ar85_1_recl.reco.root --outfname outfiles/MC/no_distortions_cosmics/Cosmics_FopiMC_86ar85_1_recl.hists.root

#reco 47mm distorted no recl
#root -l  FOPI/runRecoFOPI_MC_mb_recl.C\(\"outfiles/MC/distortions_cosmics/47mm/Cosmics_FopiMC_86ar85_1.raw.root\",86,\"ar\",85,1,0,false\) -q
#python FOPI/mberger/analyseFOPIReco_cosmics2.py outfiles/MC/distortions_cosmics/47mm/Cosmics_FopiMC_86ar85_1.reco.root --outfname anafiles/Cosmics_FopiMC_86ar85_1_distort47.hists.root
#reco 47mm distorted recl
#root -l  FOPI/runRecoFOPI_MC_mb_recl.C\(\"outfiles/MC/distortions_cosmics/47mm/Cosmics_FopiMC_86ar85_1.raw.root\",86,\"ar\",85,1,0,true\) -q
#python FOPI/mberger/analyseFOPIReco_cosmics2.py outfiles/MC/distortions_cosmics/47mm/Cosmics_FopiMC_86ar85_1_recl.reco.root --outfname anafiles/Cosmics_FopiMC_86ar85_1_distort47_recl.hists.root

#reco 35mm distorted no recl
#root -l  FOPI/runRecoFOPI_MC_mb_recl.C\(\"outfiles/MC/distortions_cosmics/35mm/Cosmics_FopiMC_86ar85_1.raw.root\",86,\"ar\",85,1,0,false\) -q
#reco 35mm distorted recl
#root -l  FOPI/runRecoFOPI_MC_mb_recl.C\(\"outfiles/MC/distortions_cosmics/35mm/Cosmics_FopiMC_86ar85_1.raw.root\",86,\"ar\",85,1,0,true\) -q

#reco 47mm distorted and real potentials no recl
#root -l  FOPI/runRecoFOPI_MC_mb_recl.C\(\"outfiles/MC/distortions_cosmics/47mm_realpot/Cosmics_FopiMC_86ar85_1.raw.root\",86,\"ar\",85,1,0,false\) -q
#python FOPI/mberger/analyseFOPIReco_cosmics2.py outfiles/MC/distortions_cosmics/47mm_realpot/Cosmics_FopiMC_86ar85_1.reco.root --outfname anafiles/Cosmics_FopiMC_86ar85_1_distort47r.hists.root
#reco 47mm distorted and real potentials recl
#root -l  FOPI/runRecoFOPI_MC_mb_recl.C\(\"outfiles/MC/distortions_cosmics/47mm_realpot/Cosmics_FopiMC_86ar85_1.raw.root\",86,\"ar\",85,1,0,true\) -q
#python FOPI/mberger/analyseFOPIReco_cosmics2.py outfiles/MC/distortions_cosmics/47mm_realpot/Cosmics_FopiMC_86ar85_1_recl.reco.root --outfname anafiles/Cosmics_FopiMC_86ar85_1_distort47r_recl.hists.root

#reco 47mm distrorted new map no recl
#root -l  FOPI/runRecoFOPI_MC_mb_recl.C\(\"outfiles/MC/distortions_newmap/Cosmics_FopiMC_86ar85_1.raw.root\",86,\"ar\",85,1,0,false\) -q
python FOPI/mberger/analyseFOPIReco_cosmics2.py outfiles/MC/distortions_newmap/Cosmics_FopiMC_86ar85_1.reco.root --outfname  outfiles/MC/distortions_newmap/Cosmics_FopiMC_86ar85_1.hists.root
#reco 47mm distrorted new map recl
#root -l  FOPI/runRecoFOPI_MC_mb_recl.C\(\"outfiles/MC/distortions_newmap/Cosmics_FopiMC_86ar85_1.raw.root\",86,\"ar\",85,1,0,true,true\) -q
python FOPI/mberger/analyseFOPIReco_cosmics2.py outfiles/MC/distortions_newmap/Cosmics_FopiMC_86ar85_1_recl.reco.root --outfname outfiles/MC/distortions_newmap/Cosmics_FopiMC_86ar85_1_recl.hists.root
#reco 47mm distorted new map corrected no recl
#root -l  FOPI/runRecoFOPI_MC_mb_recl_clcorr.C\(\"outfiles/MC/distortions_newmap/Cosmics_FopiMC_86ar85_1.raw.root\",86,\"ar\",85,1,0,true,false\) -q
python FOPI/mberger/analyseFOPIReco_cosmics2.py outfiles/MC/distortions_newmap/Cosmics_FopiMC_86ar85_1_clcorr.reco.root --outfname outfiles/MC/distortions_newmap/Cosmics_FopiMC_86ar85_1_clcorr.hists.root
#reco 47mm distorted new map corrected recl
root -l  FOPI/runRecoFOPI_MC_mb_recl_clcorr.C\(\"outfiles/MC/distortions_newmap/Cosmics_FopiMC_86ar85_1.raw.root\",86,\"ar\",85,1,0,true,true\) -q
python FOPI/mberger/analyseFOPIReco_cosmics2.py outfiles/MC/distortions_newmap/Cosmics_FopiMC_86ar85_1_recl_clcorr.reco.root --outfname  outfiles/MC/distortions_newmap/Cosmics_FopiMC_86ar85_1_recl_clcorr.hists.root

#reco 47mm distorted perfect LS field no recl
#root -l  FOPI/runRecoFOPI_MC_mb_recl.C\(\"outfiles/MC/distortions_cosmics/47mm_perfectLS/Cosmics_FopiMC_86ar85_1.raw.root\",86,\"ar\",85,1,0,false\) -q
#reco 47mm distorted perfect LS field recl
#root -l  FOPI/runRecoFOPI_MC_mb_recl.C\(\"outfiles/MC/distortions_cosmics/47mm_perfectLS/Cosmics_FopiMC_86ar85_1.raw.root\",86,\"ar\",85,1,0,true\) -q

#reco 47mm distorted no short no recl
#root -l  FOPI/runRecoFOPI_MC_mb_recl.C\(\"outfiles/MC/distortions_cosmics/47mm_noShort/Cosmics_FopiMC_86ar85_1.raw.root\",86,\"ar\",85,1,0,false\) -q
#reco 47mm distorted no short recl
#root -l  FOPI/runRecoFOPI_MC_mb_recl.C\(\"outfiles/MC/distortions_cosmics/47mm_noShort/Cosmics_FopiMC_86ar85_1.raw.root\",86,\"ar\",85,1,0,true\) -q

#reco 47mm distort shift only
#root -l  FOPI/runRecoFOPI_MC_mb_recl.C\(\"outfiles/MC/distortions_cosmics/fc_shift/Cosmics_FopiMC_86ar85_1.raw.root\",86,\"ar\",85,1,0,false\) -q
#python FOPI/mberger/analyseFOPIReco_cosmics2.py outfiles/MC/distortions_cosmics/fc_shift/Cosmics_FopiMC_86ar85_1.reco.root --outfname anafiles/Cosmics_FopiMC_86ar85_1_distort47new_fcshift.hists.root